BtaEX0000778 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44353284-44355709:+
Coord C1 exon
chr22:44353284-44353450
Coord A exon
chr22:44353619-44353763
Coord C2 exon
chr22:44355559-44355709
Length
145 bp
Sequences
Splice sites
3' ss Seq
TAAGCTTTTCTTTCCGTTAGGGA
3' ss Score
7.05
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAACACAGGGCAAAGAAAGAGATTGAATACCAAGAACTGATGTTTCTTTTAACTGGAGGAGTAAGTCTTAAGAGTGCTGAGAAAAATCCTGATCCAACTTGGCTGCAGGATAAAAGCTGGGAGGAAATTTGTCGTGCAAGTGAATTTCCTGCCTTCAGAGGACTCAG
Seq A exon
GGATCATTTTTATGACAATGTATCTGAATGGCGGGAGATCTATGACAGTAAGGAGCCACACAATGCTAAATTTCCAGCACCAATGGATACAAGGCTAAATGAACTACAGAAAATAATCATTCTTCGGTGCTTAAGACCTGATAAG
Seq C2 exon
ATAACTCCAGCTATAACTAATTATGTAACTGACAAACTAGGGAAAAAGTTTGTAGAGCCTCCACCATTTGATTTGACAAAGAGTTATTTGGATTCAAATTGCACCATTCCCTTAATTTTTGTGTTGTCTCCAGGAGCAGATCCCATGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.6=58.9)
A:
PF0302810=Dynein_heavy=FE(6.7=100)
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGAGAAAAATCCTGATCCA
R:
CATGGGATCTGCTCCTGGAGA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development