DreEX6079848 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19591148-19591802:-
Coord C1 exon
chr23:19591644-19591802
Coord A exon
chr23:19591407-19591551
Coord C2 exon
chr23:19591148-19591298
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGGATTGAATACAGGGA
3' ss Score
3.35
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
GGCTAAAAAGGAGATTGAATACTCTGAATTTATGTTCCTGCTCACTGGTGGTGTGGGACTGCAGAACAGCATCCCCAACCCTGATCCAAACTGGCTCCCTGACAAGAGCTGGGATGAGATTTGCCGAGCCAGTGATCTTCCAGCCCTTAATGGCATTAA
Seq A exon
GGAGAGCTTTATTAAGAGTCCTGAGAGTTTCCTGCCCATTTATGATAGCAAGGAGCCATTCAACACAGCTTTGCCCAAGCCCTGGTGTGATAAACTCAACGAACTTCAAAAGATGATCATTTACAGATGTCTTAGACCTGACAAA
Seq C2 exon
ATCGAACCAGCAATCAGCAAGTTTGTGACTGACAAACTGGGAAAGATATTTGTCGAACCCCCTCCTTTTGACCTGAGTAAGAGCTACAATGACTCCAACTGCACCATTCCACTGGTGTTTGTTCTCTCTCCTGGAGCAGATCCTATGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'65-65,'65-64,66-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=61.1)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCCTGCTCACTGGTGGT
R:
CAGTGGAATGGTGCAGTTGGA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]