RnoEX0028472 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2509259-2515517:+
Coord C1 exon
chr16:2509259-2509417
Coord A exon
chr16:2512091-2512235
Coord C2 exon
chr16:2515367-2515517
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTTATTCCTACTAGGGA
3' ss Score
9.52
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GGCCAAGAAAGAGATTGAATACCAGGAACTGATGTTTCTTCTAACTGGAGGAGTAAGTCTTAAGAGTGCTGAAAAGAATCCTGATCCAAACTGGCTACAGGATAAAAGCTGGGAGGAGATCTGTCGAGCAAGTGAACTCCCAGTCTTCCATGGACTCAG
Seq A exon
GGAGCATTTTTGTAATCACATACGTGAGTGGGAGGATATTTACAACAGTAAAGAGCCGCACAATATGAAACTTCCAGAATCAATGGACAAGACGCTGAACGAGCTGCAGAAAATAATAATTCTTCGCTGTCTAAGGCCTGATAAG
Seq C2 exon
ATAACCCCAGCTATAACAAATTATGTGACTGACAAACTAGGGAAAAAATTTGTAGAGCCTCCACCATTTGACTTGACAAAGAGTTATTTGGATTCAAATTGCACCATCCCTTTAATTTTTGTGCTGTCTCCTGGAGCAGATCCAATGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(12.5=61.1)
A:
PF0302810=Dynein_heavy=FE(18.3=100)
C2:
PF0302810=Dynein_heavy=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGTAAGTCTTAAGAGTGCT
R:
GCTCCAGGAGACAGCACAAAA
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]