BtaEX0000853 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1ML09]
Coordinates
chr13:17841446-17848431:+
Coord C1 exon
chr13:17841446-17841619
Coord A exon
chr13:17846688-17846794
Coord C2 exon
chr13:17848294-17848431
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTTCCTGTTTTACAGGAT
3' ss Score
10.89
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCCATAGAATGTCAAGAAGAGGAGTGTGCGGCTCTTCTGCTGGAGCATGGTGCCGACCCAAATGTCACGGATGTCAATGGCAACACCGCTCTCCACTATGCTGTCTTTTGCCAGAATGTATCACTCGCAGCAAAGCTGCTTTCCTATAATGCCAATCTAGAAGCCAGGAACGAG
Seq A exon
GATGGCCTTACACCACTCTTACTTGGCATAAGTGAAAGGAAACAGCAAATGGTGGAATTTTTAGTAAAAAAAGAAGCAGATATACATGCGGTTGATAAGATGAAAAG
Seq C2 exon
AACCGCCCTCATACTTGCTGTCAATTATGAATGTACCGATGTAGTCGGTCTTCTCCTTCAGCGAGGTGCTGATGTCTTTTCTCCAGATGTCTTTGGACGGACTGCGGAAGAATATGCTGCTATTAGTGGTTTTAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022931_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
A:
PF0002325=Ank=WD(100=91.7)
C2:
PF127962=Ank_2=FE(55.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCAAATGTCACGGATGT
R:
AGCAGCATATTCTTCCGCAGT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development