BtaEX0000896 @ bosTau6
Exon Skipping
Description
Bos taurus mitochondrial ribosomal protein S15 (MRPS15), mRNA. [Source:RefSeq mRNA;Acc:NM_001192201]
Coordinates
chr3:110017202-110018796:+
Coord C1 exon
chr3:110017202-110017250
Coord A exon
chr3:110017722-110017806
Coord C2 exon
chr3:110018738-110018796
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTATCTTCAACAGAAG
3' ss Score
8.97
5' ss Seq
AAAGTTGGT
5' ss Score
1.99
Exon sequences
Seq C1 exon
GGTTGATGATGTTGTGAAAAGACTCATATCTTTGGAAATGGCCAACAAG
Seq A exon
AAGGAAATGCTAAAAATCAAGAAAGAGCAGCTTATGAGCAAGGTCGTGGAAAACCCGAAGGACACCAGCTCCCTGGAGGCTCAAA
Seq C2 exon
TTGTTGCCTTGACTGTCAAGATCCGCAGTTACGAAGAACACATGCAGAAACATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024097_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.155 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATGATGTTGTGAAAAGACTCA
R:
GATGTTTCTGCATGTGTTCTTCGT
Band lengths:
103-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development