MmuEX0029720 @ mm9
Exon Skipping
Gene
ENSMUSG00000028861 | Mrps15
Description
mitochondrial ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:1913657]
Coordinates
chr4:125727724-125732396:+
Coord C1 exon
chr4:125727724-125727772
Coord A exon
chr4:125728569-125728653
Coord C2 exon
chr4:125732205-125732396
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCAATTTCTGTCTCCAACAGAAA
3' ss Score
9.3
5' ss Seq
AAAGTTGGT
5' ss Score
1.99
Exon sequences
Seq C1 exon
GGTTGATGATGTTGTGAAAAGAATCTTGTCTTTGGAAATGGCCAGCAGG
Seq A exon
AAAGAGAAGTTAAAAATCAAGCAAGAACAATTGATGAACAAGATTGTGGAAAACCCTGAGGATTCCAGAACCTTGGAAGCTCAAA
Seq C2 exon
GACAAAGCCCACAAACGCCATCTGCTGATGAGCATCGACCGGAGGAAAAAGTTGCTCAAAATCCTCCGTCAGACCAACTATGATGTCTTCGAAAAGACATGCAAGGAGCTAGGGGTGGAATATACCTTACCCCCTCTGCATTTCCAAAAGGTTCACCGCCGCTTCCTGGCCAAGAAGGCTCTGTGCATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028861_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
C2:
PF0031217=Ribosomal_S15=PD(47.0=60.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTGGAAATGGCCAGCA
R:
GGAAATGCAGAGGGGGTAAGG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: