RnoEX0055815 @ rn6
Exon Skipping
Gene
ENSRNOG00000008279 | Mrps15
Description
mitochondrial ribosomal protein S15 [Source:RGD Symbol;Acc:1359675]
Coordinates
chr5:144057713-144061253:+
Coord C1 exon
chr5:144057713-144057761
Coord A exon
chr5:144058691-144058775
Coord C2 exon
chr5:144061195-144061253
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCAATTTCTGTCTCCAACAGAAA
3' ss Score
9.3
5' ss Seq
GAAGTTGGT
5' ss Score
-0.09
Exon sequences
Seq C1 exon
GGTTGATGATGTTGTGAAAAGAATCCTGTCTTTGGAAATGGCCAGCAGG
Seq A exon
AAAGAGAAGTTAAAAATCAAGCGAGAACAATTGATGAACAAGATTGCGGAAAACCCTGAGGATTACAGAACCTTGGAGGCTCGAA
Seq C2 exon
TTGTTGCCTTGACTGTCAAGATCCGCAATTATGAAGAACACATGCAGAAACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008279-'5-6,'5-4,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATGATGTTGTGAAAAGAATCC
R:
TCGATGTTTCTGCATGTGTTCT
Band lengths:
105-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]