BtaEX0001434 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MB40]
Coordinates
chr18:60225434-60243938:-
Coord C1 exon
chr18:60243862-60243938
Coord A exon
chr18:60239071-60239197
Coord C2 exon
chr18:60225434-60234455
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGAGATATTTTTGTTTCAGGAA
3' ss Score
7.79
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATTGACTTCCAAAGACTCAGACTGAGGAAGAAGCCTGGAAGAGCAAAGAAAAGGAGTCAGGAATGGCTATTTCTCAG
Seq A exon
GAACAGTTGACCTTCAAGGATGTTGCTGTAGAATTCTCTCAGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGCCTTTTACATGGATGTGATGGTGGAGACCCTCAGGAACCTGATCTCTGTGG
Seq C2 exon
ATATCTCTCATATACATGTGGTCAAGAAATTACAACCAATAGCAAGTAGTGATAGAGGAGATGCATTCCAAACAGTGACATTGGAAAGAAAAGAAAGCCCTGAAATGAAATATTTTTGCTTCACGGAAATCCAGGAAGATGACTTTGGGTGTCAGTGGAAGAATGATGAAAGAAATTACAAAGGAATGCCTGTAATACATAAGGAAAATGTAACTCACAGAAGAGATAGACAAGGTAGGTGGAATGCAGGAAAGAAGCCAATTAAAAATAGACTTGTGTTAAGTTTTCAGGATGAACTGCATATATTTAAAAAAAATATTTACAAATGTCACGAGTGTGGTAAATTCTTTAATTATGGCTCCTCCCTCAGTAGACACCTTCTAATCCATACAGGAGAGAAATTATATAAGTGTGGTGTATGTGGCAATGTTTTTCGTCTAAAGTCACACCTTGTAAGTCATTGGACAACTCACACTCGTGCGAAAACTTACAAATGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045985_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NA
Main Skipping Isoform:
ENSBTAT00000054265fB231
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCCAAAGACTCAGACTGA
R:
CATCATTCTTCCACTGACACCCA
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development