BtaEX0001681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61989027-61996887:+
Coord C1 exon
chr19:61989027-61989140
Coord A exon
chr19:61995601-61995717
Coord C2 exon
chr19:61996804-61996887
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTCGATTTTTTCCCTTTAGATC
3' ss Score
11.18
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTGGTTTGCGTGGCCAGCTGTGCGGCGTGTCTCATACTCCTCACGTACGTGATTTCATTCCTCTTTCCCAGCGGAAGGAAAAATAACGGCTTTTGGTCCCTCAGCTTTTTTCTC
Seq A exon
ATCTCACTATTTATGCTCATCCTCCTGGGACTAACTCATTCTGAAAATATTATAATTATATGTATAATTTTAATACCTTCGTGCACTTCAGTTTTTTTTCTTGTCCAAATGATAGAG
Seq C2 exon
TTGTCCTCTATGTATCACAGAAGGTCCGAGAGTCAGGACCCTGAGAAGAGTGCAACTGGTAAAATGATTCTACCAATCTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.7=100)
A:
PF126982=ABC2_membrane_3=FE(13.9=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCGTGGCCAGCTGT
R:
TGGTAGAATCATTTTACCAGTTGCAC
Band lengths:
186-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development