BtaEX0002255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18206864-18213810:+
Coord C1 exon
chr25:18206864-18206964
Coord A exon
chr25:18209564-18209779
Coord C2 exon
chr25:18213600-18213810
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTTTGATGACAGGCA
3' ss Score
6.88
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
TACCAGCGTTCCTGGGAGCCTGAATGTTTACAGGCACAAAGGCCTGCATTCTGCTGAAGTAAAACCTGGAAGTCTTCGCATTTCCTGGGTTCAGGAACAAG
Seq A exon
GCAGGAGGCAAGATGAGGCTATGGCTAAAAGAACTGGTCCTCCAGGCACTGAGAAATGCCCGGGGTATCTGTGGGTCTCATGGGCAGCCACCGCCTCTTCCTGTCCCTCAGAAGATTGTGGCCACCTGGGAAGCCATCAGCCTGGGCAGGCAGCCAGTGCCTGAGTATTTCAACTTTGCCCATGATGTGCTGGACGTGTGGAGTCAGCTGGAAAAG
Seq C2 exon
GCTGGGCACCGGCCCCCAATCCCTGCCTTCTGGTGGGTTGATGGTACAGGAGCAGAGGTCAAGTGGAGCTTTGAAGAGCTGGGAGAGCAATCCAGGAAGGCAGCTAATGTGCTGGAGGGTGCCTGTGGCCTGCAGCCTGGAGACAGAATGATGCTGGTGCTCCCGCGGCTCCCGGAGTGGTGGCTGGTCAGCGTGGCTTGTATGCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449-'1-1,'1-0,3-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=2.9)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGGGAGCCTGAATGTT
R:
CATACAAGCCACGCTGACCAG
Band lengths:
298-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development