MmuEX0003602 @ mm10
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119526208-119530478:+
Coord C1 exon
chr7:119526208-119526437
Coord A exon
chr7:119528419-119528638
Coord C2 exon
chr7:119530268-119530478
Length
220 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTCTTTGGTGACAGGCA
3' ss Score
7.81
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAAACCCTGGCAGGGAGCTGCTTTCACCAGCTCACAGTGTCCTGACCCTCTGAAACTTGAAGCTGCTGACTTCTAACCCTGTTTTCTCCAGGCTGTGCTTGGGGCTAAAGCTCCCTGTCCCAATCCTGCCTTCATCGCTTCTGGGGAAATCTTCTCAGGAGCTTTTAGGTCTGCCTTGCTGCTGCAGTGAAACGCAGATGCCTTTTGTGTACCTCAGATTTTAAAACAAG
Seq A exon
GCAGAAGTTGATAGAAGTCATGAGGTTGTGGCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACACACAGCCACCACCTCCCCCGATCCCTGAGGTGGTAGCTACCTGGGAAGCCATCAGCCTGGGGAGGCAGCCAGTGCCCGAGTACTTCAACTTTGCTCATGATGTGTTGGATGTGTGGAGTCAGCTGGAAAAG
Seq C2 exon
ACAGGGCACCGGCCCCCAAATCCTGCATTCTGGTGGGTGAACGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGTGTGTGGCCTGCAACCTGGAGACAGAATGATGCTGGTGCTTCCGAGACTCCCAGATTGGTGGCTGATCAGCGTGGCTTGTATGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-'5-14,'5-11,8-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=3.0)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCACCAGCTCACAGTG
R:
CCCAGCTCCTCAAATGTCCAC
Band lengths:
295-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types