RnoEX0006240 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189241593-189247303:+
Coord C1 exon
chr1:189241593-189241820
Coord A exon
chr1:189243749-189243968
Coord C2 exon
chr1:189247093-189247303
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTCTTTGGTGACAGGCA
3' ss Score
7.55
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGAAAACCCTGGCGTGAAGCCGCTTTCACAGACTTAGTGTCCCTACCCTCTGAAAGTTGAAGCTCCTGACTCCTAATCCGGCTCTCCATAGGCTGTGCTTGGGGCTAAAGCTCCCTGTCTGAATCCTGCCTCCATCAGCTTCTGGGGAAATCTCAGGAGCTTTGTGGTCTGCCTTGCTGCCGAAGTGGAACACAGATGCCTTGTGTGCACCTCAGATTCTAAAACAAG
Seq A exon
GCAGAAGGTGACAGAAGACATGAGGTTATGGCTGAGAGGTCTGGTCTACCAGGCTCGGAGGAGTTCCTGGGGAGTCTTCAGGATTCACACACAGCCACCACCTCCCCCTATCCCTGAGGTTGTAGCTACCTGGGAAGCCATCAGCCTAGGGAAGCGGCCAGTGCCGGAGTACTTCAACTTTGCCCACGATGTGCTAGATGTGTGGAGTCAGCTGGAAAAG
Seq C2 exon
ACAGGGCACCGCCCCCCAAATCCTGCATTCTGGTGGGTGAATGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAACTGGGAAAGCAGTCCAGGAAGGCAGCCAACATCTTAGAGGGAGCATGTGGCCTGAAACCTGGAGACAGATTAATGCTGGTGCTTCCGAGACTCCCAGAATGGTGGCTGACCATCGTGGCTTGTATGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'3-6,'3-4,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.021 C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=3.0)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGTCTGAATCCTGCCTC
R:
ATTCTGGGAGTCTCGGAAGCA
Band lengths:
295-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]