RnoEX0006241 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189243749-189249710:+
Coord C1 exon
chr1:189243749-189243968
Coord A exon
chr1:189247093-189247303
Coord C2 exon
chr1:189249503-189249710
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGGCTGCACCCACTGTCCAGACA
3' ss Score
3.77
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCAGAAGGTGACAGAAGACATGAGGTTATGGCTGAGAGGTCTGGTCTACCAGGCTCGGAGGAGTTCCTGGGGAGTCTTCAGGATTCACACACAGCCACCACCTCCCCCTATCCCTGAGGTTGTAGCTACCTGGGAAGCCATCAGCCTAGGGAAGCGGCCAGTGCCGGAGTACTTCAACTTTGCCCACGATGTGCTAGATGTGTGGAGTCAGCTGGAAAAG
Seq A exon
ACAGGGCACCGCCCCCCAAATCCTGCATTCTGGTGGGTGAATGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAACTGGGAAAGCAGTCCAGGAAGGCAGCCAACATCTTAGAGGGAGCATGTGGCCTGAAACCTGGAGACAGATTAATGCTGGTGCTTCCGAGACTCCCAGAATGGTGGCTGACCATCGTGGCTTGTATGCGAACAG
Seq C2 exon
GTGTGGTCATGATCCCAGGCATTTCCCAGCTGACACAGAAGGATCTCAAGTACCGGCTACAGGCTGCCAGGGTCAAATCCATCATCACCAGTGATGCCCTAGCTCCTCACGTGGATGCCATCAGTGCTGACTGCCCCTCCCTTCAAAGCAGGCTTCTGGTGTCTGATACCAGTCGTCCAGGCTGGATCAATTTCCGGGAACTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'6-8,'6-6,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.0)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCTATCCCTGAGGTTG
R:
GCCTGGACGACTGGTATCAGA
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]