GgaEX6013225 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15243249-15245147:-
Coord C1 exon
chr14:15244941-15245147
Coord A exon
chr14:15244477-15244687
Coord C2 exon
chr14:15243249-15243456
Length
211 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTTGCTATGTTCTAGGAT
3' ss Score
9.8
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTATCATGAGGACATTTATGATATCCCGGATTCCTCAGTGCTTGCAGATTCTGAGGTCTCCTTCCAGACTTTTCCATGGATGTAACAGGCTTCTTACATCCCAGATTATTTCATATTATGACTCTGTAAACCGGTGTGAAAAGGAACTACCCAAATATTTCAACTTTGCGAGTGATGTCTTGGATGAGTGGCTGCTACTGGAGAAG
Seq A exon
GATGGAAGGCGACCCGTAAATCCAGCTTTTTGGTGGGTGAATGATGAAGGGGAGGAGGTGAAGTGGAGCTTTGAAGAGTTGGGATTTCTGTCCAGGAAAACAGCTAACATACTGTCTGAGGCATGTGGTTTGCAGAGAGGTGATAGAGTTCTGGCAGTTCTGCCTCGTGTCCCTGAATGGTGGCTACTGAGTATAGCCTGCATCCGGGCAG
Seq C2 exon
GAATTGTCTTTATTCCAGGAACGTCCCAATTAACAGCCAAAGATATTTTATACCGCCTTCAGGCTTCAAAGGCCAAGTGCATGATTACCAATGATACTCTGGCACCTGTAGTGGAATCTATCTTGCCTGACTGCCAGTTTCTGAAAACTAAACTAATTGTAGCCAAAGGGAACAGAGATGGGTGGCTCAATCTCAAAGAACTCTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.7=4.3)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCGGATTCCTCAGTGCTT
R:
TTCCACTACAGGTGCCAGAGT
Band lengths:
300-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]