BtaEX0002257 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18209564-18216921:+
Coord C1 exon
chr25:18209564-18209779
Coord A exon
chr25:18213600-18213810
Coord C2 exon
chr25:18216714-18216921
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTGCCTATGCAACTCTCTAGGCT
3' ss Score
4.93
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCAGGAGGCAAGATGAGGCTATGGCTAAAAGAACTGGTCCTCCAGGCACTGAGAAATGCCCGGGGTATCTGTGGGTCTCATGGGCAGCCACCGCCTCTTCCTGTCCCTCAGAAGATTGTGGCCACCTGGGAAGCCATCAGCCTGGGCAGGCAGCCAGTGCCTGAGTATTTCAACTTTGCCCATGATGTGCTGGACGTGTGGAGTCAGCTGGAAAAG
Seq A exon
GCTGGGCACCGGCCCCCAATCCCTGCCTTCTGGTGGGTTGATGGTACAGGAGCAGAGGTCAAGTGGAGCTTTGAAGAGCTGGGAGAGCAATCCAGGAAGGCAGCTAATGTGCTGGAGGGTGCCTGTGGCCTGCAGCCTGGAGACAGAATGATGCTGGTGCTCCCGCGGCTCCCGGAGTGGTGGCTGGTCAGCGTGGCTTGTATGCGGACAG
Seq C2 exon
GGGCCATCATGATTCCTGGCATCTCTCAGCTGACAGAAAAAGACCTCAAATTTCGGCTGCAGGCATCCAGAGCCAAGGCCATTATCACCAGTGACTCCTTGGCTCCACGGGTGGATGCCATTAGCGCCGACTGCCCTTCCCTTCAAACCAAGCTGCTTGTGTCAGACAGCTATCGGCCAGGCTGGATGAACTTCAGGGAACTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449-'3-6,'3-1,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=2.9)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGTATCTGTGGGTCTCAT
R:
GGTTTGAAGGGAAGGGCAGTC
Band lengths:
305-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development