BtaEX0002291 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011215 | ACTN4
Description
Bos taurus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001098052]
Coordinates
chr18:48723406-48726979:+
Coord C1 exon
chr18:48723406-48723491
Coord A exon
chr18:48726077-48726152
Coord C2 exon
chr18:48726887-48726979
Length
76 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCCACCGCTCTGTAGACC
3' ss Score
7.27
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATATTGTAGGCACTCTGAGGCCAGATGAGAAAGCCATCATGACTTACGTGTCCTGCTTCTACCACGCTTTCTCAGGGGCTCAAAAG
Seq A exon
ACCCTCCTCACTATTTCTGTTCCTGTTCTGTTGCCGTTTTCAACTCTTCTTGGAGGCTTTCTGTGCTTCCTGAAAG
Seq C2 exon
GCTGAGACCGCTGCCAACCGGATCTGCAAGGTGCTGGCCGTCAACCAGGAGAACGAGCACCTGATGGAAGATTATGAGAGGCTGGCCAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011215-'23-13,'23-12,24-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
ENSBTAT00000014894fB364
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTAGGCACTCTGAGGCCA
R:
GGCCAGCCTCTCATAATCTTCC
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development