GgaEX0021045 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:38545173-38546921:-
Coord C1 exon
chrUn_random:38546836-38546921
Coord A exon
chrUn_random:38545586-38545755
Coord C2 exon
chrUn_random:38545173-38545247
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCATCCTTCTGTAGACC
3' ss Score
10.16
5' ss Seq
TGGGTAACG
5' ss Score
4.85
Exon sequences
Seq C1 exon
ATATTGTAGGCACTCTCAGGCCCGATGAGAAGGCCATCATGACATACGTTTCCTGCTTCTACCACGCTTTCTCGGGGGCTCAGAAG
Seq A exon
ACCCTCTCCACTCTTTCTGGCTTTCAACTCCTCCTCCTCCTCCTCCCGGACCCTCCCGGTGCTCAGCCCCCAGCCTTTCCTTTCTGCCCATTCCTCACTCACCCACCCCGCGCAGCGAAGAGCCGCCTTCATGGGAGAGCGGAGGAAGATGAGGATGTGCTCAGAGATGG
Seq C2 exon
GCGGAAACGGCGGCGAACCGCATCTGCAAAGTGCTGGCGGTCAACCAGGAGAATGAGCACCTGATGGAGGACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014305-'10-11,'10-10,11-11
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (disopred):
C1=0.000 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(26.1=82.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTAGGCACTCTCAGGCCC
R:
AGTCCTCCATCAGGTGCTCAT
Band lengths:
157-327
Functional annotations
There are 0 annotated functions for this event