GgaINT0004891 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:38545173-38546921:-
Coord C1 exon
chrUn_random:38546836-38546921
Coord A exon
chrUn_random:38545248-38546835
Coord C2 exon
chrUn_random:38545173-38545247
Length
1588 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTCTGCTCTTCTCCTCCAGGCG
3' ss Score
12.02
Exon sequences
Seq C1 exon
ATATTGTAGGCACTCTCAGGCCCGATGAGAAGGCCATCATGACATACGTTTCCTGCTTCTACCACGCTTTCTCGGGGGCTCAGAAG
Seq A exon
GTGAGCTTGGCTGGGGCAGCTTGGGTGCAACGCTGCTAACGCTGCCTGCAGGCGGCCGCGCTGCTGCACGGCTTCTGGGCGCGGGGATGCAGGCAGGCGTAGCTGTGCTCGGGTCAGCAGAGAGCAGAGCAAATCCCCGGTGGGGATGGGATGCTGTACCCGTGAGCCGAACCATCCGGGCCCCGGCGCCACCCCACCGAGCGCCGCCTCTCCGCTCTCAGCCTTCTTTAATGAGAAGTGAGGCTGCAGGCGTGGCACGGCGGAATTGCACCTTGCAGACATGAGGTGCTGCTGCGTCCTCCTTCCCCACAGCTCTGCTCTTTTGGCACTGTTCGGGCTTAGGGAGGGAGAACCCCATCACCTGCTCAGGGCTCTGTCACCCCTGCAGAGGTCCCCTCTGTGCTTCTCACCCTGCCTTATTTTACACCCAGAGTGCCGCACAGACCCATTGTGGGCAGCTCCAGGCATCGCTGAGCCCCAGGTGGAGCAGCAATTACCACACTCAGCTAATTAATTAGAAGTGTCAGGAAACAAATGAGCCTCTCAGGTGTCCCGTGGCTCACAAAGTGGGTTAGAGAGCTGCGGAGCGCTCGGTCAGCACAAGAGACCTTGTGCAGGAGGGTCGTCGTGCATCAGAGGACCTGACTTCGTGCACGGAGGATTGAAGGTGTTCCGTGGCACACAGCAAACCCAAGGGCAGGAATTCATGCCCAGCAGTGCCTGTGCTCAGGGTTTGGCAGCATCCCCGGGTGCTGCTCTGCACCCAGCAGGAATAAGGGAAGGGGGAAGCCCTCCCCGGCTCCTCCCGAGGTCCCCCGGTGCCCGTGGGTGGGTGCTGTGTGTTCAGCCCCAGCCCTGCTGTGTTCCAGGTGTGCTCACAGCCCTCGCAGCACAGCTGGCACACCCCTGTCCCCAATGCAGGGCTCCGTGTGCCACCACACCTCGCGCAGCCCCGCGCCTCTCCCTCGCAGCTCACAGCCTCCCTGCGTTCCCACCTCTCATTTTTGCCCTATTTGTTTTATTTTCCTTTCTGCCACCTCATTCCCAAGCTCTGTTTCTCCTCTCCCCATCCTTCTGTAGACCCTCTCCACTCTTTCTGGCTTTCAACTCCTCCTCCTCCTCCTCCCGGACCCTCCCGGTGCTCAGCCCCCAGCCTTTCCTTTCTGCCCATTCCTCACTCACCCACCCCGCGCAGCGAAGAGCCGCCTTCATGGGAGAGCGGAGGAAGATGAGGATGTGCTCAGAGATGGGTAACGGCCTGCCTGGGCAGGGCTCCGAGGGCACCAAGGCTGTGCCTGGAGTTGCCGTGCTGCTGGGGGCTGTGGGGGCTCCGGCACTGCGTCCCAATGCTGCCAGCACAGCTCTGGGTGCTTTATCCCCACGGGCAGAGAGCGGTGCTGGAGCCCTCTGCAGAGCTCAGCCCAGGGCTTGGGGAAGCTCTGAGCTCTTCAGCCGCTTCGAAACCTCCTCCACGAACCCACGTGTAGGGCTGAGCCTGCTGGGAGCCCCCCGGGGGGAGCCGGGGAGGGGGCGAGCGGGTGGGCACCGCGTCCACGCGGCCCCATCGCCCTCTGCTCTTCTCCTCCAG
Seq C2 exon
GCGGAAACGGCGGCGAACCGCATCTGCAAAGTGCTGGCGGTCAACCAGGAGAATGAGCACCTGATGGAGGACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014305:ENSGALT00000023128:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(26.1=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]