RnoINT0012664 @ rn6
Intron Retention
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87092009-87096611:-
Coord C1 exon
chr1:87096526-87096611
Coord A exon
chr1:87092102-87096525
Coord C2 exon
chr1:87092009-87092101
Length
4424 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TGTGTGCTTCTCCACTCCAGGCT
3' ss Score
8.96
Exon sequences
Seq C1 exon
ACATCGTGAACACAGCCCGGCCCGACGAGAAGGCCATAATGACATATGTGTCCAGCTTCTACCATGCCTTTTCAGGAGCGCAGAAG
Seq A exon
GTACCAGGCAGGGCCAGGCAGCCCTCCTCGCCGCCACTGCCCAATGCTGCCGCTGCCTTTTGCCTCCCACGCTCACTTCATTTCTCTTGCAGACGGCAGTGGCCTCTCTTGGACTGGAAGCCAGCTCCCTCAGTCCTGGGCATTGCCGCCTATCTAGTCCTTGCTCAGTCTATTGAGTGCCTGCTGTACACCAGGCTCTGTTCAGGCAGTGAGAACACAGGCAAGTTCCTGCTGCAAGGAAGCTTATTTCCTAGTTAGGTGAGACAGACAGCATACATCAGGTCTTGTGATATGAGGAGTCAGAGGCGGCCAGGGGACAGGGTGGTGTGGTAGAGGCACCTGGGTCCCCTGGTAGCTGGGGCCATCAGTTGGAAAGGGGCTGGGGCTGCCCGGTGAAGGCTACACAGGCGGCCTCGGGAGTGAAAAGAAAGGCTCAGGTTGCAAAGCAGTGACTTGAGAGACAGGCAAGGAAAGGAAAGTTGCAAAACGCAGCTAGCTGTGGGTCGTTCTGCTTAGGGCTTTTCTTTTTTTTTTTTAAATTTGGGATACCTTTTATTTCATGTTTTTGTTTTTGTTTTAAAGACAATGTCTTGTACATACAGCTCAGCTACCTCTAGAGTCCTAATACTCCATGTGGTACCACTTGAGGCTTTTTAGTTTTACTGGGGGGTGGGGGCGGGGGAGTGACATAGTCCTGGCTGTCCTGGAGTCTTGGAACTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGCCCGAACCCAGGGCCTTGTGCTCACTGGGCAAGCGCTCTACAGCTGAGCTAAATCCCCAACCCCGTCTTGGAACTTTCTATATACAGACCCGGCTGCCTTTGATCTTCCTGTCTCTCCCTCTAGGGTGCTGGGATTGTCAGTGTATGACAGTATGCTTGACTTTTTGACAGAGTCTGATTCTGTAGCTCCTCCTGCCAGAACATCCTAGTGCCAGGATGAGAGCCGTGCACCGTAGAGCCCAGCATCTTTAGGGGTTATACAAAAATGGCTGGAAGTTCAGGTGACATGATTCTGCTGAGGGTTTCAGAAACAGTTGCTTAACTTTTGACTTTTGGCCCCAAATGCAGCTCCTTTCATAGAGTGTAGTCAGTTTAAATGGCCTGTTTGAAAATGAGACTCCTCCCTCAAAGCCTGGTGGCTCTTCTGTGCACCGTGGCAGGGCATGGCCCCCAGGCCTGAGCCTCCCTGGTTTCCAGTCCAGAGCAAGCGCTATTCTTCCCGCATGAGCCTCAGGCTGGCCGGCCACCTCCCTCCTGCATCTTTCACTCTCTCCTGTCTCTCTCTTTCTCTCTCTCTCTCTCTCTGCGCAGATATTGTAGGCACTCTGAGGCCAGATGAGAAGGCCATCATGACTTACGTGTCCTGCTTCTACCACGCCTTCTCGGGGGCCCAGAAGGTGAGCCAGGGTGGGAGGTCCCTGTAGCCAGTCTTTTGCTACTTTGTGGATTCTTTTCCCACCCTTTATCCCCCCAGTTTCACCCCTATTTCTAGATAAGAGAGAAAGAAGGATAGAGTGGGGAGAGAGAGATAGAGATCCCTGAATCTAATTTCTTTTTTTTTTTTTTTTTTTTCTTCCTTCTTTGAGCATGACTATTAACAAATCAGGACCAATACCACCTCTCGGGGCCCTGGGCATTTAATACCCTCTGAAAAGTTCACAGAATCCCAAACTTCATAGTCACAGCTGGCAGACCCACGCCTCTGCTAGAGCCTGAGGCAACTCACAGTCAACTGCTGAGGACAGTCCTAATCAGCCCTGTATCCCACACCTAATTAAAGTGAAAACTATCACTGTAAGATCCCTCCCTCCAGCTGTGGAGTCAGATTTGCCCTTCGAGTCACCTTTCAGTCAGCCCCATGGGACCACACAGGGAGGCCTGGCTAACCAGCTCAGGGTCATTATGGTCATAGGACCCCAGTGCCTTCTGTTTGACAGCAGCCAAAGCCTCACAGACCTTCTTGCATAGCCACTTATAGTGGATGTGACAGCTCTGACCACACACAGAGGAATAGAAGCCCAGATCACTGTAAATAAATGGTAGAGTTAGTGTATGACCCCTTACCTGTCAAGAACTCTACTTCAGGGCCACCACCTACCTGTGAGCCTTCTTTCAGAAAACTGTCTCCTGCCCAAATGCTCTGGAGGCTCCTGGGTAGGTCAAGTAAATATGTCTATTCTGGTATGAGTCTTCCTGAGCCCTGCTTACCTCACACCACCCCCTTGGCTCCACTCTACATAGTGCCGTGGACTCACACTTTTTTTTTTTTTTTTTTTTCCCCTTTTCCCCCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCGGACTCACACTTCTACATAGAAGTCTTGGCACTTCTGTGCCCTCCTAGTCTTGTAGGGTGGCTTGGTCAACAGTATTGTGTTAGCAGCCCAGGAGTTAGGGTCAAATGGTACTTGTTTTGGGAACGTTTACCTCCGTGGGGCCTCTCCAAGGCCTTTACCTCCCTAGGTTCCAACAGAACTCCTGTCCACACCAGGGAGGAAATGGAGGCTGTGAGACCCATCTGAAGGAAAAGGAAACTGGGGCTCAGAGACACCGTATACTGTGGGGCCTCTCCAAGGCCTTTACCTCCCTAGGTTCCAACAGAACTCCTGTCCACACCAGGGAGGAAATGGAGGCTGTGAGACCCATCTGAAGGAAAAGGAAACTGGGGCTCAGAGACACCGTATACTGTCTTCTAGAACCTTAGGTCTAGTGGGGATGCCATCACGGGCGGTCTGGCCTGGCCTGATTCCCGTTTATAAAATAAGAATCCTATTGCTTCTTACAGGATTGTTCTGGGCATGCAGTAATGGGCTCCAGGGCTTAAGACAGTCTGGCACAGTAAGGGTGCCCAGTTCTTTCCAGGTCCCTCCCCGAATGGCCAGCTTTCAGTGCCTCTTTCCTAGCCACCCCGCATGGGTTAGATCTTGTATTTGGAGTGTTTTGCTGAAGACACGGAGAGCGAAGTTATACCCCTGTCCCCACTGACTGGTAATGAAGACTGAGCAGGACTAGGTAGTGGTGAGTCCAGTTAACAGGTGGGCCTCCCTAGTCTCATGCTGACTCCTACCTGAAACATCCTGTGCCTGGAGCTGTCTTAGGGCTGGTAAAGGGACTGGTAAAGGGGTCAGTCACTAGGAAGAAAGTCCAAGGCCAGAGCAGTTGCAAGTTAGGGGGCATCTGGGCTCAGAATGCTTGTGCTCGGCGTGTCTTCTAAGATAGCCTAGTCTGCAGTGAGGAAAGCGGGGACTCTGCTATATTGACACCCAGCAGTGCCTCAAGGATGCCATCATTTCTCAGAGGCCAGTTCAGTCTTCTCAAAGTGTTTTCTGCGTGAATTCAGTACTGGCATGAGAATACTGTCTTCCCCGTGTCTAGTCACCAAAGCATTCATTCAGTCATCCTTGTCTGCATTTAAGTTCACCAGTTCTGAGCACCTACAATACCCCATGCTTCAGAAGTGGAGTAGAGCACCTCTGGCGAGCAGCTCCCCAGCAGCAGTGTGGGTTAGAGCTTGAGGTACCAACAGCTCAGTTATGGCCAGAAGCTGGCCCTAGCGGCACCTCTGGTTTTGGCCTTTGTCTCACCACCGGACCAAGCCTTGGCGCCTCCTGCCGCACAGTGTGTTGTGTACAGAGCAAGTGCTCGCCGCCTGTGGCAGTTTGTCAGCTCCCTATCTGTGCCGTGTGCGCATGGGAAAGCACACTGGCCCTGGAGCTGACTCCCAAGCCTCTGTTTTCCTCCTCATCACCCTGTAGACCCTCCTCACTATTTCTGTTCCTGTTCTGTTGCCGCTCCAACTCTTCTTGGATCTTTTTTGTGCTGCCTGAAAGGTACCTTGCCTCCCTTCTCCTGTGTGGTGTTTGTCCCTCACCAGGCTTCTAGTGTACAGCAGCCATCTCTGTATTATCTACCCTCCCTGTGCTCCTCTTCTGCCCTTCCTATTGTGACTTGTGCCCATGTGAGCCCCTATGGTCATCAGCCTCGCCTTCAAGTAGGAGCCAGAATGGGCAGGACATGCACCAAGCACTGGGACTGGCTCCTGGCACCTCCACACCACCCCTTCAGTGCTGTTTCCACTCGGTCCCGGGGACGAGAGGCCTGGTTCTTAGCAGGGGCTCAGGTCTTGCCATCCTTCTCAGCAAAGACCCTGAGGACATGTCTGTCCAAGGCCATTTTACTGGAGATGCGCTCCCTCTCCTTTCCCTCTTTGGGGAGTTCTGTGGGTCTTGGACAGCCTGCTTTCAAGGGACCTGCTTGTTAGAGGGAGGGTCCCCAGCCTCTGGCAGCCCTGACTGTGTGCTTCTCCACTCCAG
Seq C2 exon
GCTGAGACTGCTGCCAACCGGATCTGCAAGGTGCTGGCTGTGAACCAGGAAAATGAGCACCTGATGGAAGATTACGAGCGCCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433:ENSRNOT00000027773:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]