MmuINT0010484 @ mm10
Intron Retention
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:28906972-28911575:-
Coord C1 exon
chr7:28911490-28911575
Coord A exon
chr7:28907065-28911489
Coord C2 exon
chr7:28906972-28907064
Length
4425 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TGTGTGCTTCTCCACTCTAGGCT
3' ss Score
10.34
Exon sequences
Seq C1 exon
ACATCGTGAACACAGCCCGGCCCGACGAGAAGGCCATAATGACATATGTGTCCAGCTTCTACCATGCCTTTTCAGGAGCGCAGAAG
Seq A exon
GTACCAGGCAGGGCCAGGCAGCCCTCCTCGCCGCCACTGCCCAATGCCGCCGCTGCCTTTCGCCTCCCACGCTCACTTCATTTCTCTTGCAGACGGCAGTGGCCTCTCTTGGACTGGAAACCAGCTCCCTCAGTCCTGGGCATTGCTGCCTATCTAGTCCTTGCTCAGTCTATTGAGTGCCTGCTGTACACCAGGCTCTGTTCAGGCAGTGAGAACACAGGCAAGTTCCTGCTGCAAGGAAGCGTATTTCCTAGTAGGTGAGACAGACAGGGCATGTGATCCGAGGACTCACTGGACAGGGTGGTGAGGTAGAGGCACCTGGGTCCTCTGGGAGCTGGGACCATCAGTTGGAAAGGGCTTCACTCAAAACTGGGGCTGCCAGGTAAAGGCTACACAGGCAGGCCTCAGCAAGTGAGATGGCGCAGCTTGCAGAGACAGTGACTCGAGAGAGCAAGGAAAGTTGAAAACATCAGCTAGCCATGGGTCATTCTGCTGAGAGAGGTTTGTTTGTTTGTTTGTTTGTTATTTGGGGGTACCTTTTATTTATTTTTTTTTTCTTTTCTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTGGTACCTTTTATTTTATGTAAGTGTTTCGCTTGCATGTATATCTGTGCACCTGGTACCTAGGGAGGCCAGCTGTTGGATCCCTTAGAACTAGAGTTACAGATAGTTGTCAGCCACCATGTGGGAGCTTGGGTTGAACCTAAGTCCAATGCTCTTAACTGCTGAGCCATCTCTCCAGTTACAGGTTGTTTTCTTTGGTTTGGTTTGGGGGATTTTTTGGTTTTGTTTTTGTTTTTTTGATTTTTTGGTTTTTTAGACAATGTCTCGTACATATAGCTCAGCTAGCTCTAAAGTCATGATGCTCCATGTGCTACCACCTGGGGCTTTTTACTTTTGGGGGGGGTCGTTGATATAGTCCTGGCTGTCCTGGAATCTTGGAACTTTGTATGTATAGACCAGGCCAGCCTTGATCTTCCTGTCTCTGCCTCTGAGGTGCTGGGATTGCCAGTGTCTGGCAATGTTTGACTTTTTGAGACAGAATCTGATTCTTTAGTTGTTCCTGCCATAGCTTCCTGAGTGCCAGAATTGCAGATGTGCACCATAGAGCCCAGCATCTTTAGGGTGTTATGCAAATGGCTGGTAGGTCAAGTGACACGATTATGGTTAGGGTTTCAGAAACAGTCGCTTAACTTTTGACTTTTTTGGCCCTAAATGCAGCTCCTTTCATACAGTCTAGTTAGTTTTCAATGGCCTATTTGAAAATGAGGCTCCTCCCTCAGAGCCTGATGGCCCTTCTGTGCACCATGGCAGGGCATGTCCCCCAGGTCTGAGCTCCGCTGGTTTCCAGTCCAGAGCAAGCGCTATTCTTCCCGCATGAGCCTCGGGCTGGCTGGCCGCCTCCCTCCTGCATCTTTCACTCTGTCCTGTCTCTCTCTTCTCTCTCTCTCTCTGCGCAGATATTGTAGGCACTCTGAGGCCAGATGAGAAGGCCATCATGACTTACGTGTCCTGCTTCTACCACGCCTTCTCGGGGGCCCAGAAGGTGAGCCAGGGTGGGAGGACCCTGTAGCTGGTCTTATGCCACTTTGTGAGTTCTTCATCCCACCCTTTATCCCCAGTTCCACCCCTGTCACTAAATAGGAGAGAAAGCATAGAGTGGGGAGAGAAGAAATTCCTAAATCGTTCCGGGCGTGGTGGCGCACGCCTTTAATCCCGGCACTTGAGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAGAAAGAAATTCCTGAATCTAATTTTTTTTCCTTTTTTCTTCTTTGAGCACAACTACTAACAAGTCAAGACCAATACTACGCCTTGGGGCCCTAGGCATTTACATACCTTCTGAAAAGTTTACAGAATCCCAGACTTCACACACTCACAGCTGCCAGACCCATCAATGCCTTTGCTAGAGCACAAGGCAAATCATAGTCAACTGCCAAGGACAGTCCTGAGCAGCCCTATACCCCACACCTGATTCAAATGAAAACACTTTATCACTGCAAGATGTGGAGGCCCAGCTGACCAGCTCAGAGCCATCATGACCATAGGACCCGGTGCCTCCTGTTCGGCCAGGGTTTCCCAAAGCCTCACACACCTTCTAGCATAGCCACATCGGTGATGGATGTGACTCAGGGAAATAGAAGCCCAGATCACTGTAGATGATAGAGTTGGTGTCAGGAACTCTACTCCAGGGCCACCTACCTGTGAGCCTCCTTTCAGAAAATAGTCTCCTGCCCAGATGCTCAGGAGGCTCCTGGATGGGGCGGGTAAACATGTTTATTCTGGAGTGAGTCTCCCTGAGCCCTGCTTACCTTGCAGCACCACCTGGCCCCTGTCAGGGACTCAGCACGTCTATAAATCTTGGCACTTCTGTGCCCTCCTGGTCTTGTATACTGGCTTGGTCAACAGCATGTGTTAGCAGCCCAGGAGCTAAGGACGAATGGTGCTTGTTTTGGGAACGTTTACCTCCCTGGACCCTCTCCAAGGCCTTTAACTGCCTAGGTCCCAACAGAACTCCTATACACACCATGAAGGAAGTGGAGGCTGTTAGACCCATCTGAAAGAAAAAGAAACTGAGGCTCAGAGACACCACACCTGCTGTCTTCTGTATACTGCCTTCCTAGAACCTTACATCCAATGAGGACCTCCTCATGGGCAGCCTGGCCCAGCTCTGCTTTGCCCCCTCTTGGCAGCATGGTCTTGGATAGGCTACTTTACTTCAGTTTCCCCATTTATAAGATGAGAATCCTATTGCCTCGCACAGGGTTGGTCTAGGCATGCAGTAATGAGCTCCAGAGTTTAAGACAGTCTGTGGCACAGCAAAGGTGCCAAGTTCTTTTCAGGCCCCTACCCAAATAGCCAGCTTTCAATGCTCCTTTCCTACCCACTCAGCATGGGTTAGATCTTGTATTTGGAGTGTTTTGCTGGAAGGCATGGAGAAGGAAGACTATCTCATCCCCGCTGGTAATGAAGGCTGAGTGGGAATAGGAAGTGATGAGCCCCAGTTAACAGCAAGACTACCATTGGGCACGCCCACGGTGGGCCTCCCTAGCCTCATGCTATGAATCCTTTCTTTTTTTCCTACCAGAAATGCCCTGTGCCTGGAGCTGACTAAGGTCTGCTAAAGAGATCAGTCACTAGCAAGAAAGCCCAGGACAGCAGTTGCAGATAGGGGGCATCTGGGCTCAGAATGCTTGTGCTCAGCATGTCTTCTAAGGTAGCCTCGTCTGTGTAGTGAGGAGAACGGGCGACTCTGCTAGATTCAGCTTTCTCATATGTACCCCTTGGGACACCCATCAGTGCTGGATTTCCCAAGCACTGTCATGTCCCAGAGGCCAGTTCAGTCTCCTCAAAGTATTTTCTGGGTGAATTCAGGCATGCCACACAAGAGTACTGTCTTCCCTGTGTCTAGTCACCAAAGCATTCATTCTTTCTTCATGTCTGCATTTAAATTCACCAATCCCCTAAAATGCCCTGTACTCCAGCAGTGAAGTAGACCACCTCTGACTAGCAGCAGAGTAGGTTAGAGCTTGAGGTCCCAGCAGGGCTCAGTTAGGGGTCAGAGGCTGGCCCCAGCAGCTCCTCAGGTCTTGGCCTTTGTCTCATCTCTGGAACAAGTCTGGGTGCTTCCTGAGCACAGAACAAATGCACACCGCCTGTGGCTACTCTGTCCTGCGCCACATATGGATGGGAAAGCACACTGGACCTGGAGCCAACTCCCGAGCCTCTGTTTCCTCCTCATCACCCTGTAGACCCTCTTCACTATTTCTGTTCCTGTTCTGTTGCCGTTCCAACTCTTCTTGGATCTTTTTTTTTGTGCTGCCCGAAAGGTACCTGCCTCCCTTCTCCTGTGTGGCACTTGTCCCTCACCCAGGCTCTTAGTGTACCGCAGCCAACTCTATGTATCTCCCCTTCTGTGCTTCCCTTCTGCACTTCCTATTGTGACTCATACCCACATGAGCCACATGAGCCACATGAGCCACTGTAGTCAGCCTCACCTCCGAGTAGGGGCCAGAATGGGCAGAACATGCACCACATACACTGAGACTATAGTACCGCATCCCTCACCACCCTTCCAGTGAGTGCCAGTGCAGCCCTGGGAGCTAGAGGCCTGGTTCTCAGCAGGGGCTCAGGTCTTGCCACCCTGAGGACATGGCTGCTCAAGGCCACTTTACTGGAGATGCGCTTCCTCTCCTTTCCCTCTTTGGGGTGTTCTGTGGGTCTTGGACAACCTGCTTTCGGGGGACCTGCTTATTAGGAGGGAGGGTCCCCAGCCTCTGGCAGCCCTAACTGTGTGCTTCTCCACTCTAG
Seq C2 exon
GCTGAGACCGCTGCCAACCGGATCTGCAAGGTGCTGGCTGTGAACCAGGAAAATGAGCACCTGATGGAAGACTATGAACGCCTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808:ENSMUST00000068045:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types