BtaEX0002324 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013843 | ACVRL1
Description
activin A receptor type II-like 1 [Source:HGNC Symbol;Acc:HGNC:175]
Coordinates
chr5:28104608-28106113:-
Coord C1 exon
chr5:28105865-28106113
Coord A exon
chr5:28105466-28105677
Coord C2 exon
chr5:28104608-28104754
Length
212 bp
Sequences
Splice sites
3' ss Seq
CAGTATCCCTCTTCCGCCAGCCA
3' ss Score
4.59
5' ss Seq
GGGGTGCGG
5' ss Score
2.84
Exon sequences
Seq C1 exon
GTGACCCCTTGAAACCCTCTCGGGGCCCGCTGGTGACCTGCACGTGTGAGAACCCACACTGCAAGGGGCCTACCTGCCAGGGGTCCTGGTGTACAGTCGTGCTGGTGTGGGAGGATGGACACCTCCGGGAATACCGGGGCTGCGGGAACATGCACCCAGAGGTCTGTAGGGCGCGCCCCACGGAGTTCGTCAACCACTACTGCTGCTACAGCCCCCTATGCAACCACAACGTGTCCCTGACGCTAGAAG
Seq A exon
CCACCCAGACTGCTCCGGAGCAGCCTCAAGGAGATGGCCAGCTGCCTTTGATCCTGGGCCCCGTGCTGGCCTTTCTAGTGCTTGTGGCCCTGGGTGCCCTGGGCCTGTGGCATGTCCGGCGGAGGAAGGAGAAGCAGCGGGGCGCGAACAGTGAGCTGGGCGAGTCCAGCCTCATCCTGAAGCCATCTGAGCAGGGGGACAGCATGTTGGGG
Seq C2 exon
GAAAGGGCCGCTATGGTGAGGTGTGGCGGGGCCTGTGGCATGGTGAGAGCGTAGCCGTCAAGATCTTCTCCTCCAGAGATGAACAGTCCTGGTTCCGGGAGACTGAGATCTACAACACAGTGCTGCTCAGACACGACAACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013843_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=84.5)
A:
PF085157=TGF_beta_GS=PU(10.3=4.2)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGAACCCACACTGCAAG
R:
CCGGAACCAGGACTGTTCATC
Band lengths:
303-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development