RnoEX0006484 @ rn6
Exon Skipping
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142777349-142778292:+
Coord C1 exon
chr7:142777349-142777600
Coord A exon
chr7:142777789-142778000
Coord C2 exon
chr7:142778193-142778292
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCCCCCTCCTCCAGCCA
3' ss Score
8.09
5' ss Seq
GGGGTATGG
5' ss Score
5.84
Exon sequences
Seq C1 exon
GAGACTTGGTGAAGCCCTCCAGGGGTCAGCTGGTAAACTGCACTTGTGAGAACCCACACTGCAAGAGGCCAATCTGCCAGGGGGCATGGTGCACAGTGGTGCTAGTTCGAGAGCAGGGCAGGCACCCCCAGGTCTATCGGGGCTGCGGGAGCCTGAACCAGGAGCTCTGCCTGGGACGTCCCACGGAGTTTGTGAACCATCACTGCTGCTATAGATCCTTCTGCAACCACAATGTGTCCCTGATGCTGGAGG
Seq A exon
CCACCCAAACTCCTTCGGAGGAGCCAGAAGTAGATGCCCATCTGCCTCTGATCCTGGGTCCCGTGCTGGCCTTGCTGGTCCTGGTGGCCCTGGGCACTCTGGGCTTGTGGCGTGTCCGGAGAAGGCAGGAGAAGCAGCGGGGTCTGCACAGTGACCTGGGCGAGTCCAGTCTCATCCTGAAGGCATCGGAACAGGGAGACAGCATGTTGGGG
Seq C2 exon
GACTTCCTGGTCAGCGACTGTACCACAGGCAGCGGCTCAGGGCTACCCTTCTTGGTGCAGAGGACAGTAGCGCGACAGGTTGCACTGGTGGAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=84.7)
A:
PF085157=TGF_beta_GS=PU(10.3=4.2)
C2:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGTCAGCTGGTAAACTG
R:
CTCTGCACCAAGAAGGGTAGC
Band lengths:
295-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]