BtaEX0002325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013843 | ACVRL1
Description
activin A receptor type II-like 1 [Source:HGNC Symbol;Acc:HGNC:175]
Coordinates
chr5:28104608-28105677:-
Coord C1 exon
chr5:28105466-28105677
Coord A exon
chr5:28105115-28105214
Coord C2 exon
chr5:28104608-28104754
Length
100 bp
Sequences
Splice sites
3' ss Seq
CGGCCTCTCGGTACTCCCAGGAC
3' ss Score
6.75
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCACCCAGACTGCTCCGGAGCAGCCTCAAGGAGATGGCCAGCTGCCTTTGATCCTGGGCCCCGTGCTGGCCTTTCTAGTGCTTGTGGCCCTGGGTGCCCTGGGCCTGTGGCATGTCCGGCGGAGGAAGGAGAAGCAGCGGGGCGCGAACAGTGAGCTGGGCGAGTCCAGCCTCATCCTGAAGCCATCTGAGCAGGGGGACAGCATGTTGGGG
Seq A exon
GACCTCCTGGACAGTGACTGTACCACGGGCAGTGGCTCAGGGCTCCCGTTCCTGGTGCAGAGGACAGTGGCTCGACAGGTCGCCCTGGTGGAGTGTGTGG
Seq C2 exon
GAAAGGGCCGCTATGGTGAGGTGTGGCGGGGCCTGTGGCATGGTGAGAGCGTAGCCGTCAAGATCTTCTCCTCCAGAGATGAACAGTCCTGGTTCCGGGAGACTGAGATCTACAACACAGTGCTGCTCAGACACGACAACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013843_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(10.3=4.2)
A:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTTTCTAGTGCTTGT
R:
ATCTCAGTCTCCCGGAACCAG
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development