DreEX6081196 @ danRer10
Exon Skipping
Gene
ENSDARG00000018179 | acvrl1
Description
activin A receptor type II-like 1 [Source:ZFIN;Acc:ZDB-GENE-021003-1]
Coordinates
chr23:27918737-27922226:-
Coord C1 exon
chr23:27922048-27922226
Coord A exon
chr23:27920867-27920966
Coord C2 exon
chr23:27918737-27918883
Length
100 bp
Sequences
Splice sites
3' ss Seq
CATGTAATTGTCATCTTTAGGAT
3' ss Score
9.93
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TGGAGAAGCCCATCAGAGTGATTCTGCTGGTTGGAGTGCCGTTGCTGGTGTTGTTGGTGATTGCCATGGCAGCTTGTGGACTTGTGTTATGGCTGCGTACAAGACGTCAATACTGCCATCCGGTTGAGCACGATACCTCCATGCTTAAAGTCCCCAGTGGAGGAGACCCCACATATGGG
Seq A exon
GATATCTTTGATGAGTTTTGTACATCGGGCAGTGGCACTGGTCTGCCCTATCTGGTGCAGAGGACCATGGCGCGACAGATCTCTCTGGTTGAGTGTGTTG
Seq C2 exon
GTAAAGGCCGTTATGGTGAGGTATGGAGAGGCACCTGGATGGGAGAAAGTGTGGCTGTCAAGATTTTCTCCTCTCGTGATGAGCAGTCTTGGTTTCGAGAGACTGAAATCTACAACACGGTCCAACTAAGGCATGAAAACATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018179-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(10.3=5.0)
A:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAGCTTGTGGACTTGTG
R:
GCCTTAGTTGGACCGTGTTGT
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]