MmuEX6056596 @ mm10
Exon Skipping
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:101135749-101137130:+
Coord C1 exon
chr15:101135749-101135960
Coord A exon
chr15:101136128-101136227
Coord C2 exon
chr15:101136984-101137130
Length
100 bp
Sequences
Splice sites
3' ss Seq
TAACTACTTGGTGTCCCTAGGAC
3' ss Score
9.16
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CCACCCAAACTCCTTCGGAGGAGCCAGAAGTTGATGCCCATCTGCCTCTGATCCTGGGTCCTGTGCTGGCCTTGCCGGTCCTGGTGGCCCTGGGTGCTCTAGGCTTGTGGCGTGTCCGGCGGAGGCAGGAGAAGCAGCGGGATTTGCACAGTGACCTGGGCGAGTCCAGTCTCATCCTGAAGGCATCTGAACAGGCAGACAGCATGTTGGGG
Seq A exon
GACTTCCTGGACAGCGACTGTACTACGGGCAGCGGCTCGGGGCTCCCCTTCTTGGTGCAGAGGACGGTAGCTCGGCAGGTTGCGCTGGTAGAGTGTGTGG
Seq C2 exon
GAAAGGGCCGATATGGTGAGGTGTGGCGCGGTTCGTGGCATGGCGAGAGTGTGGCGGTCAAGATTTTCTCCTCACGAGATGAGCAGTCCTGGTTCCGGGAGACGGAGATCTACAACACAGTTCTGCTTAGACACGACAACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-'13-20,'13-19,14-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032298=Alpha_GJ=PD(82.5=73.2),PF085157=TGF_beta_GS=PU(10.3=4.2)
A:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGATGCCCATCTGCCTC
R:
AATCTTGACCGCCACACTCTC
Band lengths:
250-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types