GgaEX7006235 @ galGal4
Exon Skipping
Gene
ENSGALG00000012551 | ACVR1
Description
Activin receptor type-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90ZK6]
Coordinates
chr7:35769796-35774664:-
Coord C1 exon
chr7:35774447-35774664
Coord A exon
chr7:35771637-35771736
Coord C2 exon
chr7:35769796-35769942
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGATCTTGCTTTTGAACAGGAT
3' ss Score
8.81
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GGCAAACCCTGCAAGGGGAAGCTGCAGGTTACAGCATGGAAACACTAATCATCGTTATACTGGCTCCTGTAGTAGTGCTGGTAATTTTCTCTGTGGTAGCTGTGCTCATCATCCGGAGGATACAGAAGAACCACATGGAGAGACTCAATTCTAGAGATGCAGAATATGGCACAATTGAGGGACTCATTGCTTCAAATGTTGGAGACAGTACATTGGCA
Seq A exon
GATTTATTGGACCATTCCTGCACATCTGGAAGTGGTTCTGGACTTCCATTCTTGGTGCAAAGAACAGTGGCTCGCCAGATCACGCTTGTGGAGTGTGTAG
Seq C2 exon
GAAAGGGCCGTTATGGAGAAGTCTGGAGGGGTCAGTGGCAAGGAGAGAATGTTGCTGTGAAGATCTTCTCTTCTAGGGATGAAAAATCCTGGTTCAGGGAAACTGAATTGTATAACACTGTGTTGCTGCGGCATGAAAACATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012551-'6-10,'6-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(58.6=79.5),PF085157=TGF_beta_GS=PU(10.3=4.1)
A:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGGAAGCTGCAGGTTAC
R:
CACTGACCCCTCCAGACTTCT
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]