RnoEX6016926 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44453465-44462831:-
Coord C1 exon
chr3:44462620-44462831
Coord A exon
chr3:44459185-44459284
Coord C2 exon
chr3:44453465-44453611
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGTTTTACATTACAGGAA
3' ss Score
9.34
5' ss Seq
TCGGTAATT
5' ss Score
7.06
Exon sequences
Seq C1 exon
GGAAATCCTTCCCTGGATCGCAGAACTTCCACCTGGAAGTTGGCCTTATCATCCTCTCCGTGGTGTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGCGTTGCTCTCAGGAAGTTTAAAAGGCGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACTATCGAAGGGCTCATCACCACCAACGTCGGAGATAGCACTCTAGCG
Seq A exon
GAATTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGTCG
Seq C2 exon
GGAAGGGCCGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAGGCGAAAATGTTGCTGTGAAGATCTTCTCCTCCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGAATTGTACAACACGGTGATGCTGAGGCATGAGAATATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033-'15-12,'15-11,16-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(10.3=4.2)
A:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTTGCGGTATGCCTTT
R:
TGTCTCCCTGAACCACGACTT
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]