BtaEX0002427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104392669-104395145:+
Coord C1 exon
chr11:104392669-104392850
Coord A exon
chr11:104394797-104394932
Coord C2 exon
chr11:104395016-104395145
Length
136 bp
Sequences
Splice sites
3' ss Seq
AGCCCCCGCTCTCCCGGCAGGTT
3' ss Score
11.66
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CGGTGAGGGTGCGTGGCCGCTACGTTGTGGCCGGAAACGGGAGCGCGTCTGCCAGCACCAGCTACCCCTCCCTCCTGGAGGACAACCGCGTGGAGTACAGGGTCACCCTGAGCGAGGACCGGCTGCCCCGCCGGGAGGAGATCCGCATCCGGGGCCCCACCCGGGACGACATGGAGATCCAG
Seq A exon
GTTTACAGGCGCTACAGTGAGGAGTACGGCAGCCCCGCCCGCCCCGACATCACCTTCATCTACTTCCAGCCGGAGCAGCGGCGGGCCTGGGCGTGGGTCCCGGTGCAGGGGCCCTGCTCCGTGAGCTGCGGGGCAG
Seq C2 exon
GGCTGCGCCAGGTGACCTACAGGTGTCGGGACCAGTCCAGGAGCGAGTGGGTGGAGGCTGCCCACTGTGCAGGGAGCCAGCCCCCCGTGGCATGGTCAGAGACCTGCACCCCTGGGCCCTGCCCCCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'18-25,'18-24,20-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCTACCCCTCCCTC
R:
CCAGGGGTGCAGGTCTCTG
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development