GgaEX7009811 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6916097-6918734:+
Coord C1 exon
chr17:6916097-6916278
Coord A exon
chr17:6916717-6916852
Coord C2 exon
chr17:6918605-6918734
Length
136 bp
Sequences
Splice sites
3' ss Seq
ACCACCTCTTCTTTCATCAGGTT
3' ss Score
10.48
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTGTGAAGGTTAAAGGTGAATATGTGGTTGCTGGAAAGGGAAAAATCTCACTGAATGTCACCTATCCCTCAGTTCTGGAGGACAGACAGATTGAATACAAAGTGTTTCTCACCAACCACAACCTCCCAAGCCTGGAGGAAATCCATGTGGATGGACCAATCCAAGAAGAAATTGAAATACAG
Seq A exon
GTTTATAGAAGGTATGCAAAAGAATATGGCGATGCCACCAACCCAGACATCACCTTCAGCTACTTTGTGCCAAAAGAGAATCTGACGTATAGGTGGATTCCTCACGAGGGGCCGTGTTCAGTGACCTGTGGAGGAG
Seq C2 exon
GTACACAACTTGTGAACTATGTGTGCTTTGATCAGATGAAGAATGAAATAACAGAAAATCAGCTGTGTCTGGGACTCCTACAACCCCTTCCAGGGTATGAACCCTGTGCCGTGGAACCATGCCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'21-23,'21-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(48.0=100)
A:
PF059869=ADAM_spacer1=PD(18.4=50.0),PF0009014=TSP_1=PU(25.5=30.4)
C2:
PF0009014=TSP_1=PD(72.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTGCTGGAAAGGGAAA
R:
AAGGGGTTGTAGGAGTCCCAG
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]