BtaEX0002867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52681229-52682757:-
Coord C1 exon
chr16:52682633-52682757
Coord A exon
chr16:52682452-52682557
Coord C2 exon
chr16:52681229-52681356
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGCCCTGTGCCTCAGGTC
3' ss Score
8.98
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ACTCTTCGCCACCCAAGACCTGTGCTGAGATGCTTTGTGAGTTTGGGGCATCCTGTGTGGAGGAGGCTGGCTCTGCCCACTGCGTGTGCCCAACACCCACCTGTCCAGGGGCCGATGCTACCAAG
Seq A exon
GTCTGCGGGTCAGATGGAGTCACTTATGGCAATGAGTGCCAGCTGAGGACCATCGCCTGCCGCCAGGGCTTGGAGATCTCTATCCAAAGCTTCGGCCCCTGCCAGG
Seq C2 exon
CCACCAAGGTGTTCCAGGGTGTGCTGGAGCTTGAGGGGGTCGAGGGGCAAGAACTGTTCTACACGCCGGAGATGGCAGACCCCAAGTCTGAGCTGTTTGGGGAGACTGCCAGGAGCATTGAGAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191_MULTIEX2-11/13=10-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(12.7=16.7),PF0005016=Kazal_1=PU(28.6=33.3)
A:
PF0005016=Kazal_1=PD(67.3=91.7)
C2:
PF0139015=SEA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAGACCTGTGCTGAGAT
R:
GCGCTCTCAATGCTCCTGG
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development