MmuEX6098665 @ mm9
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:155547894-155548589:-
Coord C1 exon
chr4:155548465-155548589
Coord A exon
chr4:155548286-155548391
Coord C2 exon
chr4:155547894-155548199
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTCCCTGGCCTCCAGGTC
3' ss Score
9.19
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATCCCACAACACCAGTGACTTGTGTGGAAATGCACTGTGAGTTTGGCGCCTCCTGCGTAGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCAGAGGCTAACTCTACCAAG
Seq A exon
GTCTGTGGATCAGATGGTGTCACATACGGCAATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGG
Seq C2 exon
AGAGTGTTGCTCCTGGGGTTTCCCCTACATCTGCATCTATGACCACCCCAAGGCATATCCTGAGCAGGACACTGGCGTCTCCCCACAGCAGCCTTCCTCTGTCTCCCAGCACTACTGCCCATGATTGGCCCACCCCATTACCCACATCACCTCAGACCGTAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGGCCAGTCTTGCTACAGCGATCTTCAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGAGGAGCTCAGTGGCGATGAGGAGGCCAGTGGGGGCGGGTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.990
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(12.7=16.7),PF0764810=Kazal_2=PU(16.7=16.7)
A:
PF0764810=Kazal_2=PD(78.6=91.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAACTCTCACATGTCCAG
R:
GCAAGACTGGCCACATCAGAG
Band lengths:
252-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: