BtaEX0002877 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52681229-52683327:-
Coord C1 exon
chr16:52683163-52683327
Coord A exon
chr16:52682864-52683007
Coord C2 exon
chr16:52681229-52681356
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCCCTGCCTCCCAGCCT
3' ss Score
6.42
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTCATGCCAGTGTAACCCACACGGCTCCTACGGCGGCACCTGTGACCCTGTCACAGGTCAGTGCTCCTGCCGCCCAGGTGTGGGGGGCCTCAAGTGTGACCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGTATCGTCACTGACGGCCGGAGCGGCTGTACCC
Seq A exon
CCTGCAGCTGTGACCCCCGGGGTGCCGTGCGGGACGACTGTGAGCAGATGACTGGGCTATGTTCCTGTAAGCCTGGGGTGGCCGGGCCCAAGTGTGGGCAGTGTCCAGATGGCCGTGCCCTGGGCCCTGCTGGCTGTGAAACAG
Seq C2 exon
CCACCAAGGTGTTCCAGGGTGTGCTGGAGCTTGAGGGGGTCGAGGGGCAAGAACTGTTCTACACGCCGGAGATGGCAGACCCCAAGTCTGAGCTGTTTGGGGAGACTGCCAGGAGCATTGAGAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191_MULTIEX2-9/13=8-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=92.9)
A:
PF0005319=Laminin_EGF=PU(85.5=95.9)
C2:
PF0139015=SEA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAACCCACACGGCTCCTAC
R:
CCAAACAGCTCAGACTTGGGG
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development