GgaEX6023920 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2724513-2725270:-
Coord C1 exon
chr21:2725106-2725270
Coord A exon
chr21:2724813-2724956
Coord C2 exon
chr21:2724513-2724637
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTCCTTGCTCAGCCT
3' ss Score
7.82
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCACCTGCCAGTGCAACCCCTATGGCTCCTATGGAGGAACCTGCGACCCTGCCACGGGGCAGTGCTCCTGCAAGCCAGGTGTTGGGGGGCTCAAGTGTGACCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGCATCGTCACCGACAGCAAGAGCGGCTGCACGC
Seq A exon
CCTGTAACTGCGACCCGGTGGGCTCAGTGCGTGATGACTGCGAGCAGATGACTGGGCTCTGCTCCTGCAAGACTGGGATCACTGGCATGAAGTGCAACCAGTGTCCCAACGGCAGCAAGATGGGCATGGCTGGCTGTGAAAAAG
Seq C2 exon
ACCCATCAGCTCCAAAATCCTGTGAGGAAATGAGCTGCGAGTTCGGGGCTACGTGTGTGGAGGTCAACGGCTTTGCCCACTGCGAGTGCCCGTCCCCACTCTGCTCAGAGGCCAACATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'34-31,'34-30,37-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=92.9)
A:
PF0005319=Laminin_EGF=PU(85.5=95.9)
C2:
PF0005319=Laminin_EGF=PD(12.7=16.7),PF0005016=Kazal_1=PU(34.0=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGAGGAACCTGCGACCC
R:
GTCATGTTGGCCTCTGAGCAG
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]