BtaEX0004330 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002293 | ARL5A
Description
Bos taurus ADP-ribosylation factor-like 5A (ARL5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046245]
Coordinates
chr2:44468905-44480954:+
Coord C1 exon
chr2:44468905-44469205
Coord A exon
chr2:44479637-44479697
Coord C2 exon
chr2:44480807-44480954
Length
61 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTTTTTTTTCCAGAGC
3' ss Score
9.19
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GAGGTTCGTCGCACACAACGCGGCGGCGATGTCCGCGAGCCAGGCGGGAGCCGCGGCGGCAGCGGCGGGGCCTCAAGCACGGCACGGCGGCCTGGGCTTCGGCCTCCCTCCGGTTCCTAAGAAGCGGGCCGACGGCCAGCGCGGCAGCAGCAGCGGCAGAGACGGAGGCTCCGGCGCGTCTCTCTCCTCCCCTTGAGCCTGAGCCGGGGGAGGCCAGGCGGCCCGGGTGGCTGGAGAGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACCAGGATATGGAGACTGTTCAATCACCAGG
Seq A exon
AGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGGAAAACTACCATCCTTTACCAGTT
Seq C2 exon
TTCTATGAATGAAGTTGTGCATACATCCCCAACAATAGGAAGTAATGTAGAAGAGATAGTGATTAATAATACACGTTTTCTAATGTGGGATATCGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002293_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(6.4=68.8)
A:
PF0002516=Arf=FE(11.6=100)
C2:
PF0002516=Arf=FE(28.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACTGTTCAATCACCAGG
R:
CGAAGAGATTCTTGGCCACCG
Band lengths:
136-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development