RnoEX6016864 @ rn6
Exon Skipping
Gene
ENSRNOG00000006839 | Arl5a
Description
ADP-ribosylation factor like GTPase 5A [Source:RGD Symbol;Acc:621327]
Coordinates
chr3:37938550-37946999:-
Coord C1 exon
chr3:37946871-37946999
Coord A exon
chr3:37939135-37939195
Coord C2 exon
chr3:37938550-37938697
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGGTTTTTATTTCAGAGC
3' ss Score
9.28
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTTGTGTTTGGGCCGCACTGACAACAGCTGGGGTTCTAGGGTGAAGACCGAGGGCCCTGGCCCTAGAGGCGCCACCGAGCCCACAGTTTGCAGAATGCGGAAAACTGGAACTAGTGCTGGACTCGTCTG
Seq A exon
AGCACAAAGTTATTATTGTTGGGCTGGACAATGCCGGGAAGACTACCATCCTTTACCAGTT
Seq C2 exon
TTCCATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGCAATGTGGAAGAGATTGTGGTTAATAATACACGTTTCCTGATGTGGGATATTGGTGGCCAAGAATCCCTTCGTTCTTCCTGGAACACTTATTATACTAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006839-'2-2,'2-1,6-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0002516=Arf=FE(11.6=100)
C2:
PF0002516=Arf=FE(28.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTAGTGCTGGACTCGT
R:
AACGAAGGGATTCTTGGCCAC
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]