GgaEX1009082 @ galGal4
Exon Skipping
Gene
ENSGALG00000012509 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr7:34815004-34819094:-
Coord C1 exon
chr7:34818994-34819094
Coord A exon
chr7:34817871-34817931
Coord C2 exon
chr7:34815004-34815151
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTATTTTTATTTCAGAGC
3' ss Score
7.91
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCCGTGCCTGCCCGGCCGCGTTCCGGTGTTGGCACGGCTGAACCCGGACCGTCTGCGTGGTGGTGGCGTACGAGGCGGCTCCGCAGAACCGCAGCGTGTCG
Seq A exon
AGCACAAAGTAATCATTGTTGGTCTGGATAATGCAGGAAAAACTACCATTCTTTATCAATT
Seq C2 exon
CTCAATGAATGAAGTGGTGCATACCTCACCTACGATAGGCAGCAATGTGGAAGAGATCGTGGTTAACAACACACGCTTTCTGATGTGGGATATTGGAGGGCAGGAGTCCCTGCGGTCTTCGTGGAACACCTACTACACCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509-'0-4,'0-0,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0002516=Arf=FE(11.8=100)
C2:
PF0002516=Arf=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTGGCGTACGAG
R:
TCCCACATCAGAAAGCGTGTG
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]