BtaEX0004676 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21813465-21825635:+
Coord C1 exon
chr2:21813465-21813671
Coord A exon
chr2:21814116-21814186
Coord C2 exon
chr2:21825530-21825635
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTATTTAAAGTGA
3' ss Score
5.22
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GCTTCTCCAGCTCACACAACTCCACAGACCCAAAATACAACTGGTCGTCGAAGAAGAGCAGCTAATGAAGATCCCGATGAAAAAAGGAGGAAGTTTCTGGAAAGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAGAGAAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCAGAAGACTTGAGTTCATTAAATGGTCAACTGCAG
Seq A exon
TGAATATAGTGCTCGTGAAAGGTGCCAGATTGACAGCTTTGGAACTGAAGGACTAATTACCCACAGAACAG
Seq C2 exon
AGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295_MULTIEX2-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.694
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
NA
C2:
PF0017016=bZIP_1=PD(26.2=47.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTCAAGATGCCGACAAA
R:
GGCGGTTACAGGGCAATCTTT
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development