HsaEX0006503 @ hg38
Exon Skipping
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:175080660-175093267:-
Coord C1 exon
chr2:175093061-175093267
Coord A exon
chr2:175092543-175092616
Coord C2 exon
chr2:175080660-175080765
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTGTTTTATTTAAAGTGA
3' ss Score
5.99
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GCTTCTCCAGCTCACACAACTCCACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAGCAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTTTAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCTGAAGACTTGAGTTCATTAAATGGTCAGCTGCAG
Seq A exon
TGAATATATTGCTCGTGAAAGGTGCCAGATTGACAGCTTTGGAAACTGAAGGACTCTAATTATCCACAGACCAG
Seq C2 exon
AGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966_MULTIEX1-13/13=12-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.568
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
NA
C2:
PF0017016=bZIP_1=PD(26.2=47.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGAAGAGCAGCTAACGA
R:
TCTCAGCAGGGTGACTTCACT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development