GgaEX1009616 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16190328-16195350:+
Coord C1 exon
chr7:16190328-16190534
Coord A exon
chr7:16190950-16191022
Coord C2 exon
chr7:16194501-16195350
Length
73 bp
Sequences
Splice sites
3' ss Seq
CACTGTTTTTTCCTTTAAAGTGA
3' ss Score
7.54
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCATCACCAGCTCAGCCTACACAACAAACACCAAATACAGGTGGTCGGCGAAGAAGAGCTGCTAATGAAGACCCTGATGAAAAACGAAGGAAGTTTCTTGAGCGAAACCGAGCTGCTGCTTCCAGATGCCGACAGAAACGGAAGGTCTGGGTACAGTCATTGGAGAAGAAGGCTGAAGACCTGAGCTCGCTAAATGGCCAGTTACAG
Seq A exon
TGAATGTAGTGCTCGTGAAAGGTGCCAGATTGACATCACTGGAAACTGAAGGCCTCTTTTGTACACAGAACAG
Seq C2 exon
CCTATTTTCCATAAAGACCACCTGTTAACATGACCTGAGGTTAACATATTTTGAAAGAGCTGGAAGGATGTCATATTGTCAGATGCATGATAAGAAAACTGCAAGGTATATAGGAGTTGATTCTAACAACCTGCTTTTGTTATCAGTCCAAAGTGGCTCTTACTAGTAGCATGTAAATGGCAGCTATTGATTTGTCTTTCCTTCATATTCCACATACCAAATGTGTCTGGGACTTATTCTCTTCTACTTTTGGGAATGGTTTGTAAATGGAATATGATGCTATTGGCTCAGTGTTGATGTTACTAACAGTGCTAGCTATGTTTTCAGGGAGCATGCCTCAAGTTATTAATTTAGTATAGGAACTCTTTTTTTTTTTAATCTGCTTTAAAATAAAGTCTTTGCTTTTTTTCATTTCTTTTAGCAAGGCACTGCCTTTTCAACTCTTTTTCATGAATACTAGATTTATTTACGCTGGTAAACAGCTGCTTCATTTTTATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'24-32,'24-31,25-32
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCGCTAAATGGCCAGTT
R:
AGCCACTTTGGACTGATAACA
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]