BtaEX0007299 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55126884-55133880:+
Coord C1 exon
chr3:55126884-55126970
Coord A exon
chr3:55128215-55128335
Coord C2 exon
chr3:55133804-55133880
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTTTCATATGTGTAGGTG
3' ss Score
8.17
5' ss Seq
TAGGTACCA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GTCATAGTGATAGTGCCTTTCTTTGACTGCTATGAGTCCATGGTGAGAATGGCTGGAGCAACACCTGTTTTTGTTCCCCTGAGATGT
Seq A exon
GTGTATACCAAAGAGGAACTCCAAGTAATTGCCGACCTTTGCATCAAATATGACACACTCTGCATCAGTGATGAGGTTTATGAATGGCTTGTATATACTGGAAATAAGCATTTTAAAATAG
Seq C2 exon
CCACTTTTCCAGGTATGTGGGAGAGAACAATAACCATAGGAAGTGCTGGAAAGACTTTCAGTGTAACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505_MULTIEX3-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.3=100)
A:
PF0015516=Aminotran_1_2=FE(10.4=100)
C2:
PF0015516=Aminotran_1_2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGTGATAGTGCCTTTCTTTGAC
R:
AGTTACACTGAAAGTCTTTCCAGCA
Band lengths:
154-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development