MmuEX6074471 @ mm9
Exon Skipping
Gene
ENSMUSG00000040213 | Ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142388928-142392799:+
Coord C1 exon
chr3:142388928-142389053
Coord A exon
chr3:142389146-142389266
Coord C2 exon
chr3:142392723-142392799
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTCATGTGTGCAGGTG
3' ss Score
10.88
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
AAACCTACTGACGGGATGAAGTGGACTAGCTCTGACTGGACATTCGATCCTCGAGAACTGGAAAGTAAATTCAGTTCCAAAACGAAAGCCATAATATTAAATACTCCACACAACCCCCTCGGCAAG
Seq A exon
GTGTATACCAGACAGGAGCTGCAAGTCATTGCTGACCTTTGCGTCAAGCACGACACTCTGTGCATCAGCGATGAGGTTTATGAATGGCTTGTCTATACTGGACATACGCACGTAAAAATAG
Seq C2 exon
CCACTCTTCCAGGTATGTGGGAGAGAACAATAACAATAGGAAGTGCTGGCAAGACATTCAGTGTGACTGGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.7=100)
A:
PF0015516=Aminotran_1_2=FE(10.4=100)
C2:
PF0015516=Aminotran_1_2=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTACTGACGGGATGAAGTG
R:
CTTCCAGCCAGTCACACTG
Band lengths:
202-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: