GgaEX1013190 @ galGal3
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15843012-15845580:+
Coord C1 exon
chr8:15843012-15843134
Coord A exon
chr8:15843224-15843344
Coord C2 exon
chr8:15845504-15845580
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTCTTGCATCCCAGGTA
3' ss Score
9.38
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
AAAAATGGTGGGAACTCTGCATCTAGTGCTGATTGGATCTTAGATCCAGCTGAACTTGCAAGTAAATTTAATTCCAAAACAAAAGCGATTATTCTGAATACCCCACACAACCCTATCGGCAAG
Seq A exon
GTATTTACCAGAGAAGAACTCCAAGTAATAGCTGATCTCTGTATTAAACATGATACTCTATGCATCAGTGATGAGGTGTATGAGTGGCTGGTGTACAAGGGAAACAAACACATAAAAATAG
Seq C2 exon
CTACGTTGCCAGGTATGTGGGAAAGAACAATAACTATAGGAAGTGCTGGGAAAACATACAGTGTAACTGGTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.5=100)
A:
PF0015516=Aminotran_1_2=FE(10.5=100)
C2:
PF0015516=Aminotran_1_2=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGGAACTCTGCATCTAGT
R:
TTCCAACCAGTTACACTGTATGT
Band lengths:
194-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]