BtaEX0007916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017866 | CD36
Description
Bos taurus CD36 molecule (thrombospondin receptor) (CD36), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001278621]
Coordinates
chr4:40614502-40641934:-
Coord C1 exon
chr4:40641763-40641934
Coord A exon
chr4:40626574-40626711
Coord C2 exon
chr4:40614502-40614709
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTTTCTTAAAGCAT
3' ss Score
8.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCATTCTTGGATACTTGGAGGTGGGGCTGACGGATGTACAGCGGTGATTTGACCCAGCACTTGAGGCAGACACAACAAGAGTCATCAGTGTTAATTTCGTTGTCCTCCAACCAGCATTCTGAAAGTGCGTTGACACTGGTGGCCTTGCACTTTTTCATCGGACTTCCAACTG
Seq A exon
CATATTTAAACTCACACACTTTTTATAATGAGGATTTCGGTGTAGGGTTTTCTGCAGGACACCATTTGGTCCTACTAAGAACTGACTGTTCAAATGTTGGAACATTTGATCGGAAAATACTTCTTAGTCTTTTTAAAG
Seq C2 exon
AACCAGACCTCTTGGCAACCACTTTCATCAGACCCGGGAGTTGGAAAGAAGCAGGTGCTGAACCTCAGTTTTTCCTTGAACAAGAAAAATGGGGTGCAATCGAAACTGTGGGCTCATTGCTGGTGCTGTCATTGGTGCAGTCCTGGCTGTGTTTGGAGGGATTCTAATGCCAGTTGGAGACATGCTTATTGAGAAGACAATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017866_MULTIEX1-2/5=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0113016=CD36=PU(6.2=70.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTTGAGGCAGACACAA
R:
ACCAATGACAGCACCAGCAAT
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development