MmuEX0010197 @ mm10
Exon Skipping
Gene
ENSMUSG00000002944 | Cd36
Description
CD36 antigen [Source:MGI Symbol;Acc:MGI:107899]
Coordinates
chr5:17829456-17888747:-
Coord C1 exon
chr5:17888711-17888747
Coord A exon
chr5:17835618-17835671
Coord C2 exon
chr5:17829456-17829549
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGACTTTTTCTTCTTCACAGCTG
3' ss Score
8.55
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATCCTGTGACTGGGCAAGCAAGCTGTTCTAGAAGTTG
Seq A exon
CTGCCTTCTGAAATGTGTGGAGCAACTGGTGGATGGTTTCCTAGCCTTTCAAAG
Seq C2 exon
GTAGTTTACAAATGATTTGAAGTGCTGATCCTTTCAGAGTCTCAACAGATTATTTCTTAAACAGCTCATACATTGCTGTTTATGCATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002944_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGTGACTGGGCAAGCAA
R:
ATGCATAAACAGCAATGTATGAGCTG
Band lengths:
124-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types