MmuEX0010197 @ mm9
Exon Skipping
Gene
ENSMUSG00000002944 | Cd36
Description
CD36 antigen [Source:MGI Symbol;Acc:MGI:107899]
Coordinates
chr5:17335274-17355610:-
Coord C1 exon
chr5:17355475-17355610
Coord A exon
chr5:17341436-17341489
Coord C2 exon
chr5:17335274-17335367
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGACTTTTTCTTCTTCACAGCTG
3' ss Score
8.55
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGCAGTGATTTGACTTGTGGCAAACAGGGCTGGAGATATCAGGGACTCTGTAACCTTGCAACTGCATTTTGATGGTTCCTTTAAACTTGTGGCCTTGCACTCTCTCATCGGACTTCTAGCTGATTACTTCTGTGTA
Seq A exon
CTGCCTTCTGAAATGTGTGGAGCAACTGGTGGATGGTTTCCTAGCCTTTCAAAG
Seq C2 exon
GTAGTTTACAAATGATTTGAAGTGCTGATCCTTTCAGAGTCTCAACAGATTATTTCTTAAACAGCTCATACATTGCTGTTTATGCATGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002944-'3-5,'3-3,4-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTTGCACTCTCTCATC
R:
TGCATAAACAGCAATGTATGAGCTG
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: