BtaEX0007949 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006984 | CD55
Description
Bos taurus CD55 molecule, decay accelerating factor for complement (Cromer blood group) (CD55), mRNA. [Source:RefSeq mRNA;Acc:NM_001030303]
Coordinates
chr16:5110207-5119093:-
Coord C1 exon
chr16:5119008-5119093
Coord A exon
chr16:5115073-5115261
Coord C2 exon
chr16:5110207-5110866
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATGTTATGATGTTTTAAAAGAAA
3' ss Score
3.39
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
ATACAAATTAGTTGGTGCAACTTTTAGTTTCTGTGCTCCTGTGGGAAATACTGTTGGGTGGACTAATGAATTTCCAGAATGCCAAG
Seq A exon
AAATTTTATGTCCAGAACCACCAAAAGTTGACCATGGAATGATTCAAGAGAAACAAAACAGTTATGCATATGGACAATCTGTAACATATAAATGTATGGAAGGCTTCACCCTACATGGAGAGAGCTCTATCTATTGTACTGTAAAAGATGACCAAGGAGAGTGGAGTGGCCCCCTACCTCAGTGTAGAG
Seq C2 exon
AAACTGATGTCACACCAACAGTTCCAAAATCCACTGAAGTAAATGTTCCAGGTACCAAAGTCCTATCAACTCCTCAGAAACCCACCACAGTGAATGTTTCAGCTACAGAAACCCCACCAACTCCTCAGAAACCCACTACTGTCAATGTTTCCGCTACAGAAACCCCACCAACTCCTCAGAAACCCACCACTGTAAATGTTCCAGCTACAGAAACCCCACCAACTCCTGAGAAATTCATCACAATAAATTCTTCAGCTACAAAGCCCCCACTAGTTTCTCAGACATACACCACTGTAAATGTTCCAGCTACAAAGGTCCCATCACCTCCTCAGAAACCTTCCACAGCAAATGGTTCTGCCACAACAGCCTGGAATTCCCCAATATCAAACACTGTCTCTACAGCAGCTCAGAATCTCCTCATGGCAAATGATTCTGCAACCACACCAACAACCCAAAGATTCACCCCAGCAAAATCTTTACTTATACAGAATCTTAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006984_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.937
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
PF0008415=Sushi=WD(100=92.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCTGTGCTCCTGTGGGA
R:
TTCTGAGGAGTTGGTGGGGTT
Band lengths:
242-431
Functional annotations
There are 1 annotated functions for this event
PMID: 17007930
Alternative splicing generates either a protein with a GPI anchor or with a transmembrane domain. Different localizations shown by immunohistochemistry.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development