MmuEX6027160 @ mm10
Exon Skipping
Gene
ENSMUSG00000026399 | Cd55
Description
CD55 molecule, decay accelerating factor for complement [Source:MGI Symbol;Acc:MGI:104850]
Coordinates
chr1:130449417-130456906:-
Coord C1 exon
chr1:130456821-130456906
Coord A exon
chr1:130452384-130452575
Coord C2 exon
chr1:130449417-130449563
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTACTTTGATTCTTTTTCAGAAA
3' ss Score
8.86
5' ss Seq
TAGGTAATC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GTACAGGCTAGTCGGTGTCTCCTCTACTTTCTGTTCTGTCACAGGAAATACTGTTGATTGGGACGATGAGTTTCCAGTGTGCACAG
Seq A exon
AAATACATTGTCCAGAGCCACCAAAAATCAACAATGGAATAATGCGAGGGGAAAGTGACTCTTATACGTATAGCCAGGTGGTCACCTATTCATGTGACAAAGGCTTCATCCTGGTTGGAAATGCTAGCATTTATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAG
Seq C2 exon
AGAAATCCAAGGTCCCAACGAAGAAACCAACAATTAATGTTCCAAGTACAGGAACCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026399-'7-13,'7-11,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.272 C2=0.990
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGCTAGTCGGTGTCTCC
R:
CTTTAACTGTGGAAGGTTTCTGAGGA
Band lengths:
226-418
Functional annotations
There are 1 annotated functions for this event
PMID: 17007930
This event
Alternative splicing generates either a protein with a GPI anchor or with a transmembrane domain. Different localizations shown by immunohistochemistry.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types