BtaEX0008044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51859769-51861592:-
Coord C1 exon
chr13:51861541-51861592
Coord A exon
chr13:51860834-51861189
Coord C2 exon
chr13:51859769-51859810
Length
356 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTAATTTACTCTAGGCC
3' ss Score
7.33
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTCTGTGCATGGACTCTCCCAGCCCTATGGACCCCAACATGGCAGAGCAGAC
Seq A exon
GCCAAACAAAACAGTTGCTGCAAGCTGGTTTGGCCCTTGGCCCTCCTATCAGTCACCACTGGTTTCAGTGACATTTCATCCGCTGGCCAACCCTTGGACCAGGCCCTTTGTGAAGGAGAGTGGAGAAGTTGAGGGGCTCTGCTCAACACAGTTCTCTGCTTCTTGGTTGTGGGGCAGGAGTAGTACCTTCCAGAGCACAGCTGTTCCCATCCAGCTGTTCAGGCCCCAGAAGGGAGAGCAGGCGTTACTGGGAACAACGGGCAAACCCGGCCTGGGCTGAGCGACTGTGGATTTGGGTTTAGGGCGGTGGCTGTCTTTCCTCCCACTGCCTTTGATCAGACTGGGCTGGGCTGCAG
Seq C2 exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGAGTTATTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.237 C2=0.467
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
NO
C2:
PF066178=M-inducer_phosp=FE(33.3=100)
Main Inclusion Isoform:
ENSBTAT00000011100fB1542
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development