HsaEX0014007 @ hg38
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr20:3798412-3800329:+
Coord C1 exon
chr20:3798412-3798449
Coord A exon
chr20:3798873-3799004
Coord C2 exon
chr20:3800288-3800329
Length
132 bp
Sequences
Splice sites
3' ss Seq
AAAACTTTAACTCACTCTAGGCC
3' ss Score
6.24
5' ss Seq
TTGGTGGGC
5' ss Score
3.03
Exon sequences
Seq C1 exon
GTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCAC
Seq A exon
GCCAAACAAAACACAGTTGCCTGCAGATTGATTTGGCTCTTGGCCGATCAGCAACCTCTGACTTCGATGACACTTTACCCTCTGGCCAGCCCTGGTCTAGGCCCTTTCTGCAAGGGAATGGAGAGAGAGTTG
Seq C2 exon
GTTTGAACAGGCCATCCAGGCAGCCAGCCGGATCATTCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224_MULTIEX1-1/16=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.444
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(33.3=77.8)
A:
NO
C2:
PF066178=M-inducer_phosp=FE(33.3=100)
Main Inclusion Isoform:
ENST00000245960fB1488
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development