BtaEX0008096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69282309-69287481:-
Coord C1 exon
chr21:69287419-69287481
Coord A exon
chr21:69285899-69286495
Coord C2 exon
chr21:69282309-69282357
Length
597 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCGCCCCGTCCACAGTGA
3' ss Score
8.14
5' ss Seq
GTAGTATGT
5' ss Score
3.71
Exon sequences
Seq C1 exon
ACGGGGACCGGATCGCTATTGGCCTCGAGGAAGGGCTCTACGTCATAGAGGTGACCCGGGATG
Seq A exon
TGATCGTCCGTGTGGCTGACTACAAGAAGGTGTACCAGATCGAGCTCGCCCCCAAAGAGAGAGTCGCCGTCCTCCTCTGCGGCCGGAACCACCACGTCCACCTCTGTCCGTGGTCCTCCTTCGATGGGGCCGAGAGCAACATGGACATCAAGCTTCCGGAGACAAAAGGCTGCCAGCTCATAGTGACCGGGACGCTGAAGAAGAGCGGCCCCACCTGCCTGTTTGTGGCAGTGAAGCGGCTGGTCCTTTGCTATGAGATCCAGAGAACTAAGCCTTTGCACAGGAAGCTCAGCGAGCTTGTGGCCCCTGGCAATGTGCAGTGGATGGCCGCAGTCAAGGACAGGCTCTGTGTTGGCTACCCTTCCGGGTTCTCTCTGTTGAGCACCCAGGGAGATGGGCAGGCTCTAAACCTGGTAAATCCCAATGACCCCTCGCTTACGTTCCTCTCACAACAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAAAAGTGAGGAGTACCTGCTTTGCTTCAGCCACATGGGACTGTACGTGGACCCACAAGGTCGGAGGTCACGCGCTCAGGAGCTCATGTGGCCTGCGGCGCCCGTTGCCTGTA
Seq C2 exon
GGGATCTGAACCAGGAGTGGCTGTGCCGCTAAGGAGTATGTCTGACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_MULTIEX1-22/28=21-28
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.9=100)
A:
PF0078017=CNH=FE(74.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development